[PyMOL] arrow objects

2007-09-14 Thread Gianluca Santarossa
Dear all, I would like to add a number of arrows inside a picture connecting for example two atoms. I have some troubles because I did not find a CONE primitive to add at the end of a cylinder. Is there any available code for doing that? Moreover, I don't clearly understand how I can get the

Re: [PyMOL] arrow objects

2007-09-14 Thread Tsjerk Wassenaar
Hi Gianluca, It would have been worthwhile checking the archive of the mailing list: http://sourceforge.net/mailarchive/message.php?msg_id=8ff898150701110024y4b111ab2ic195813792c4b8d%40mail.gmail.com It's a script of mine; if you encounter any problems or have suggestions, feel free to contact

Re: [PyMOL] arrow objects

2007-09-14 Thread Gianluca Santarossa
Tsjerk Wassenaar wrote: Hi Gianluca, It would have been worthwhile checking the archive of the mailing list: Dear Tsjerk, I looked in the archive for quite a lot of time! I am sorry I missed it... Thanks for the answer and the script. Gianluca

[PyMOL] how to illustrate internal cavity?

2007-09-14 Thread Ramachandran Murali
I like the way GRASP can show internal cavity in a protein. I am wondering whether it is possible to identify and show internal cavities in a protein with pymol. I can identify internal cavities using voidoo, but still can not get to show blob-like representation inside the cavity with pymol.

[PyMOL] svn 1.0r2?

2007-09-14 Thread William Scott
Is there a way to get the current (is it 1.0r2?) svn pymol? What I am using currently has a problem in which the tcltk menu freezes after I use the pdb download plugin. Thanks. Bill William G. Scott Contact info: http://chemistry.ucsc.edu/~wgscott/

Re: [PyMOL] svn 1.0r2?

2007-09-14 Thread DeLano Scientific
Bill, See Source code? under the 1.0r2 news item at http://pymol.sf.net (may need to refresh browser). Cheers, Warren -Original Message- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of William Scott Sent: Friday,