hello,
Can't find anything about this in docs or in settings:
Where are sphere diameter settings controlled for individual atomic
species: I'm trying to make fig with ions and the sizes don't seem
to be right - Cl too small and Na too big.
Thanks
--
Mark Mayer Ph.D.
LCMN NICHD NIH DHHS
Bld
set sphere_scale should scale the spheres, but they should be
proportionate and they are van der waal spheres I guess, so chlorine
is smaller than soduim..
http://pt.chemicalstore.com/
227 vs 175 pm for na and cl respecively.
On Nov 26, 2007 4:15 PM, Dr. Mark Mayer wrote:
> hello,
>
> Can't fin
Hi Mark,
You can also directly change the vdw radius of sodium to its ionic radius:
alter r. na\+,vdw=1.02
rebuild
Cheers,
Tsjerk
On Nov 27, 2007 1:15 AM, Dr. Mark Mayer wrote:
> hello,
>
> Can't find anything about this in docs or in settings:
>
> Where are sphere diameter settings controll
Okey, something wierd and I do not understand. I am attaching 2 pdb
files and 2 png's from pymol. 3.pdb, 4.pdb, 3.png and 4.png.
Now the only difference between 3 and 4 are in blank spaces. and the
sphere radius change between the two pdb files. In one Na is bigger
and in other Cl is ..
any ideas
