Re: [PyMOL] How to use PyMOL without GUI ?

2008-03-04 Thread Justin Lecher
Yang, Zheng schrieb: Dear All, Would you please remind me how to start PyMOL in Linux, without the GUI, only command lines? Just like Matlab, we using ‘matlab -nojvm’ to disable the graphic interface. I am running PyMOL to ray-trace a figure. But the protein is too big. It always

[PyMOL] Fwd: Apply a transformation matrix to a selection

2008-03-04 Thread Toni Pizà
create a, resi cmd.transform_selection(a, [[x,x,x,x],[x,x,x,x],[x,x,x,x],[x,x,x,x]], homogenous=1) Thanks (is better late than never)! But I want to apply a set of selective transformations with a time between them (using the time.sleep() function of python), making the efect to

[PyMOL] How to make the dashed line having more dots?

2008-03-04 Thread JunJun Liu
Hello everybody, I want to make a picture on which two close atoms are connected by a dashed line. I use the distance command to make the dashed line. However, there's only one dot to compose the whole dashed line. Is there a way to make the dashed line having more dots? == What I

Re: [PyMOL] How to make the dashed line having more dots?

2008-03-04 Thread Abhinav Verma
play with set dash_gap, 0.3 (or choose your value) cheers, Abhi On Tue, Mar 4, 2008 at 10:15 AM, JunJun Liu ljjl...@gmail.com wrote: Hello everybody, I want to make a picture on which two close atoms are connected by a dashed line. I use the distance command to make the dashed line.

Re: [PyMOL] How to make the dashed line having more dots?

2008-03-04 Thread Schubert, Carsten [PRDUS]
JunJun there are a couple of settings which relate to dashes. Go to Setting-Edit All... and filter by dash. You need to play around with these settings to get the desired effect. Be aware, some of these changes only become visible after raytracing. Cheers Carsten -Original