Hi Warren,
Thanks! That did the trick.
All the best,
--Buz
On Aug 21, 2008, at 4:25 PM, DeLano Scientific wrote:
Buz,
This is something PyMOL didn't handle well until recently, but I
think you
can now prefix the minus sign with a backslash in order to force
PyMOL to
interpret the val
Buz,
This is something PyMOL didn't handle well until recently, but I think you
can now prefix the minus sign with a backslash in order to force PyMOL to
interpret the value numerically instead of as a range.
# create some negative residue identifiers
load $TUT/1hpv.pdb
alter chain A, resi=int(r
phenix.reduce is an option
-Original Message-
From: pymol-users-boun...@lists.sourceforge.net
[mailto:pymol-users-boun...@lists.sourceforge.net]on Behalf Of David A. Horita
Sent: Thursday, August 21, 2008 3:32 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] hydrogen naming
Hi,
Dear All,
Does anyone know how to select residues with negative sequence numbers
in Pymol?
I have a protein molecule with two residues with negative sequence
numbers (-2 and -1). When I issue the command:
cmd.select('temp', 'resi -2 and name CA')
Pymol selects the alpha carbons of residu
Hi,
How do I get proper (HN,HA, HE1, etc) hydrogen naming when using h_add
(instead of H01, H02, ...)?
Worst case I can build them in Xplor/CNS; second worst would be if there
is a uniform rule per residue that I could write a script to convert on
a residue type basis.
Thanks,
Dave
--
Hey once again everyone,
This is along the lines as my previous questions... When I do:
set ray_trace_mode, 2;
It produces a 'black and white image', however this really is of the outlines
of the objects in the model. Is there a way I can manually make certain
objects into this outline r
Jhon,
This sounds like a typo in your bashrc file, wherein code is being
accidentally run instead of being used to define a path or alias, etc.
Another possibility could be that the Terminal application has somehow
stored some kind of state that is being restored on launch (this used to
happen
