Hi Warren,
I notice the FAQ link is missing from the website. I found the page but no
link, was looking so my students can cite pymol appropriately. Will it be
reinstated?
Cheers
J
_
Joel Tyndall, PhD
Senior Lecturer in Medicinal Chemistry
National School of
Hi Warren --
That's fantastic news! It sounds like a great plan; please let me
know if we can do anything to help out, particularly with the
interface, annoying "ObjectMapLoadDXFile-Error" messages and related
verbosity, etc.
Thanks!
-- Nathan
On Sep 18, 2008, at 2:32 PM, DeLano Scient
> This might be a good reason to start moving towards distribution of
> APBS and PDB2PQR with PyMOL! :)
Indeed, along those lines, here is the plan:
Starting with PyMOL 1.2, we will start distributing an accompanying
open-source compilation named FreeMOL, which includes several packages many
use
Hi Gilles --
I installed APBS 0.4.0 and my pymol version is the latest build for
windows, ie 1.1 r0, the apbs plugin is the latest also I believe.
That's a very old version of APBS (2005); the latest is 1.0.0 and can
be downloaded from http://apbs.sourceforge.net/#download
The b factor er
Hi Warren --
Strictly speaking, the issue may be with PDB2PQR itself, not APBS.
Furthermore, we don't yet know whether a combined development
version of all
three packages would still reproduce the problem.
This might be a good reason to start moving towards distribution of
APBS and PDB2P
Joachim,
No, just a clarification:
zoom center, distance
where distance is a number is merely a special-case use of:
zoom selection, buffer
In that the pseudo selection "center" is just a fixed point in space, so
buffer can be thought of as being a distance defining a box around
So there something missing in the "manual" at
http://www.pymolwiki.org/index.php/Zoom
zoom [ selection [,buffer [, state [, complete
Where is the distance here???
Did you just add this today to the text?
Am 17.09.2008 23:09, DeLano Scientific schrieb:
Joachim,
The trick with that i
I installed APBS 0.4.0 and my pymol version is the latest build for
windows, ie 1.1 r0, the apbs plugin is the latest also I believe.
The b factor error is only visible when calculating the grid. I already
use the b factor change (alter 1cjc, b=0), and the workaround works
perfectly when the e
