"select hetatm and resname atp" or "select hetatm and r. atp"
see also: "help selections"
gilleain
On Tue, Sep 23, 2008 at 7:18 PM, Paul Shannon
wrote:
> What command will select a HETATM of ATP? I am looking at 1ATP.pdb,
> in which the ATP molecule appears
> as shown below.
>
> I found 'selec
What command will select a HETATM of ATP? I am looking at 1ATP.pdb,
in which the ATP molecule appears
as shown below.
I found 'select hetatm' but found no way to be more specific, in the
spirit of
'select hetatm and name=ATP'
Thanks!
- Paul
HETATM 2937 O2 PO3 E 338 18.820 3
Hi Gilles --
I'm glad things are working now!
Thanks,
Nathan
On Sep 23, 2008, at 4:02 AM, Gilles Truan wrote:
I think I found the problem with reading externally generated pqr
files...
When pymol generates by itself the pqr file, it puts it in the
working directory, hence the pymol-gene
Hey all,
One of the other students in my lab is trying to run pymol as
PyMolLX11Hybrid.app in MacOSX 10.4. He installed the AutoDock plugin in
/Applications/PyMolLX11Hybrid.app/pymol/modules/pmg_tk/startup. After
installing it, when he restarts the program he receives the error: Unable to
ini
I think I found the problem with reading externally generated pqr files...
When pymol generates by itself the pqr file, it puts it in the working
directory, hence the pymol-generated.in used for apbs and the pqr file
are in the same directory. In the pymol-generated.in the file name of
the pqr
Thank you Tom!
Well, I can change my APBS script to remove all alternate conformations
from b to d or e!!!
Thank you again for pulling out the information.
Gilles
Thomas Stout a écrit :
To follow up on one of Gilles least important questions: I was convinced that the PDB
must contain structur
Dear Paul --
On 23 Sep 2008, at 00:05, Paul Shannon wrote:
How can I turn sequence display on from a pymol script?
I guess
set seq_view, 1
would do.
HTH
Kind regards.
-- Leo --
Chavas Leonard, Ph.D. @ home
Research Associate
Mar
