[PyMOL] adding python modules for MacPyMOL

2008-12-17 Thread Ben Eisenbraun
Is it possible to add additional python modules to a MacPyMOL installation? I am trying to install the PyNMR plugin: http://maple.rsvs.ulaval.ca/mediawiki/index.php/PyNMR And it requires the Numeric python module. I have an external python installation built with the module, but it seems that

Re: [PyMOL] PyMol memory vs. computer memory

2008-12-17 Thread DeLano Scientific
How large is large? With enough RAM, PyMOL can do molecular surfaces up to perhap a hundred thousand atoms or so, but above that, you probably need to fall back on Gaussians as illustrated in the script below: Cheers, Warren # load a whopping big PDB load one_million_atoms.pdb, struct spectrum

[PyMOL] PyMol memory vs. computer memory

2008-12-17 Thread Crystal K. Chuang
Hello, When I try to add a surface to a very large structure and PyMol gives me the error message "PyMol just ran out of memory and crashed" am I receiving this message due to limitations of the PyMol program, or do I need to install more memory on my computer? Thanks -Crystal