[PyMOL] APBS "hangs" upon exit

2009-08-19 Thread Kelly-Anne Twist
Hi, I just installed pymol-py25 and APBS via fink. I can use APBS to generate some beautiful electrostatic potential maps but when I exit APBS the pymol command line is frozen. I can move molecules around in the Pymol viewer but I cannot save the images or files. Can anyone suggest a fix for this

[PyMOL] Transparent surfaces and presets

2009-08-19 Thread Duca, Jose
Has anybody else played with presets and transparent surfaces? When I do preset -> ligand site -> cartoon and then try to create a surface on top of it, the surface cannot be shown as transparent; while if you try other presets surface transparency seems to work OK. Is there a reason for this b