Oscar,
If you visit the PyMOL-Wiki, you will find a script called "modevectors.py":
http://www.pymolwiki.org/index.php/Modevectors
There are several examples there that will allow you to customize the arrows.
Sean
> Dear all,
>
> Is it possible to show normal model/vectors of the "selected
Hi,
I have generated a morph between two large scale domain motions using
Rigimol . The output is fine except that the two domains pass through
each other during their trajectory. Anyone know how to avoid this type
of problem.
Thanks
Colin
-
Colin,
Unfortunately, that is hard to do: there is no guarantee that the
proposed (characteristic) path of motion which relates any two spacial
orientations will possess reasonable chemistry or sterics. RigiMOL does
make an attempt to resolve simple conflicts, and the refinement step can
address
Hello Pymol users & coders,
I'm trying to make a class where I align two structures, it works, but
I got an (for me) unusual behavior when I use the class twice.
I have the next code:
import __main__
__main__.pymol_argv = [ 'pymol', '-qc'] # Quiet and no GUI
import pymol
import sys, time, os
c
Is there any documentation on getting information out of alignment objects into
scripts? I tried looking around the wiki, but I didn't see anything.
I'm just wondering things like if I have a residue in one object, finding the
residue in another object that has been aligned.
Thanks,
David
Hi,
Could you please help me with a pymol problem. I have ubuntu linux and I
have pymol in the /usr/bin (comes with ubuntu installation) and also one
in the /programs/linux directory. But I can't open pymol in a terminal
(both installations), only from applications/education menu. I get this
er
