Carlos, David, etc.,
>From the open-source code:
http://pymol.svn.sourceforge.net/viewvc/pymol/trunk/pymol/layer4/Cmd.c
The returned rms values are as follows (in order):
return Py_BuildValue("(fiififi)",
rms_info.final_rms,
rms_info.final_n_atom,
rms_info.n_cycles_run,
rms_inf
On Fri, Sep 11, 2009 at 1:59 PM, Maia Cherney wrote:
> Is it posible in pymol to select all residues of a certain type
> automatically, like all arginines or all lysines + arginines in a chain?
select resnam arg
select chain A and (resnam lys or resnam arg)
-
Maia,
select all_arg_lys, resn arn+lys
Cheers,
Warren
> -Original Message-
> From: Maia Cherney [mailto:ch...@ualberta.ca]
> Sent: Friday, September 11, 2009 2:03 PM
> To: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] Alignment Objects
>
> Hi,
> Is it posible in pymol to sele
Colin,
Can you describe what you are trying to accomplish (overall) in more
detail?
There are different approaches one could take depending on the
objective...
The simplest, but limited approach is to use the mset and madd commands
with variable numbers of frames:
# show the initial state (1) f
Hi,
Is it posible in pymol to select all residues of a certain type
automatically, like all arginines or all lysines + arginines in a chain?
Maia
--
Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30
Hi,
Anyone know how I can include a morph in the middle of a more complex
movie? I have generated the morph (refine_rigimol.pdb) but cant figure
how to include this set of frames into the middle of my movie. Im
using Macpymol 1.2 ( generated the rigimol morph in ipymol).
Many thanks
Colin
Hi David
On Thu, 10 Sep 2009 14:47:43 -0700 (PDT) David Hall
wrote:
> Is there any documentation on getting information out of alignment objects
> into scripts? I tried looking around the wiki, but I didn't see anything.
>
> I'm just wondering things like if I have a residue in one object, find
Maia,
you have to install libpng and/or libpng-devel.
Andreas
On Fri, Sep 11, 2009 at 3:04 AM, Maia Cherney wrote:
> Hi,
> Could you please help me with a pymol problem. I have ubuntu linux and I
> have pymol in the /usr/bin (comes with ubuntu installation) and also one
> in the /programs/lin
