Nick,
You can manually create/delete bonds using PyMOL builder (click the
"builder" button in the upper control window). The command to create
a bond is "bond," but you really don't want to poke around the
internal code for bonds. Feel free, but consider yourself warned.
:-)
Cheers,
-- Jason
Markus,
PyMOL is a multithreaded application and it'll accept input from the
two locations asynchronously. Sync works until the next command is
done--so, a script, a series of single commands will not do. Embed
your scripts inside "python" blocks:
# your_script.py
python
cmd.fetch("1rsy")
cmd.s
Hello list,
when I load an xyz file, pymol somehow manages to add bonds to the atoms.
What function does that? Can I directly call that function to recalculate
the bonds?
nick
--
Download Intel® Parallel Studio Eval
Try t
The page,
> http://www.unicom.com/pw/reply-to-harmful.html
does have some good ideas. Anyhow, let's all just try to ensure we
hit "Reply to All". This has worked fine for years for the vast
majority of the list users. If more than a handful of users wanted
this changed I'd consider it.
Chee
while I agree with many of the points in that article, I've found it
often penalizes members of a community who participate the most
strongly by having them:
a) receive a lot of private e-mail that should go to the list, meaning
they have to explain to a lot of people the purpose of lists and what
Okay, now I got two private mails, which I think should've gone to the
list :) Otherwise, I might even get more, and nobody else would know
whereabout the discussion was heading. And it was about discussion,
not only about personal enlightenment, although that was a main point
for me. A quite good
Hi,
starting PyMOL with the '-p' option to let it accept input from stdin is a
convenient way to trigger it from external programs.
However, it seems that one can run into synchronization problems when this is
combined with the '@' command for running scripts.
For example, the following setup le
