[PyMOL] echoing command line history

2010-03-18 Thread Tsjerk Wassenaar
Hi Jason, e.a. I would really like to be able to echo my session command line history to a file. I'm not sure whether I just missed something, or that it's not in yet. If the latter is the case, I'd like to put it forward as a feature request. Otherwise, I'd be eager to be enlightened. I found som

Re: [PyMOL] echoing command line history

2010-03-18 Thread Folmer Fredslund
Dear Tsjerk, On 18 March 2010 10:08, Tsjerk Wassenaar wrote: > Hi Jason, e.a. > > I would really like to be able to echo my session command line history > to a file. I'm not sure whether I just missed something, or that it's > not in yet. If the latter is the case, I'd like to put it forward as

Re: [PyMOL] echoing command line history

2010-03-18 Thread Tsjerk Wassenaar
Hi Folmer, How silly. Now checked and found it in the manual even! Why didn't I check that before? Well, thnx a 1e6 anyway. Cheers, Tsjerk On Thu, Mar 18, 2010 at 10:22 AM, Folmer Fredslund wrote: > Dear Tsjerk, > > > On 18 March 2010 10:08, Tsjerk Wassenaar wrote: >> Hi Jason, e.a. >> >> I w

[PyMOL] [PyMol] get distance of bond object

2010-03-18 Thread koray
Hi, I created bond objects between residues I want to observe. Now I have 35 bond objects. I want to color them based on the bond length. But for that I should get the distance information of the bond object. If I say show label, it shows the leght of the bond. Is there a way to get this info b

Re: [PyMOL] [PyMol] get distance of bond object

2010-03-18 Thread Jason Vertrees
Koray, Use cmd.get_distance when you have two atoms: x = cmd.get_distance("10/CA", "11/CA") print x To script a solution to your problem I'd do: # # If your first selection (from residue A) is called "yourFirstSele" # and your second selection (from resisude B) is called, "yourSecondSele" # then

[PyMOL] crashing in XP

2010-03-18 Thread victor kenyon
hi all, sorry if this is redundant, i have yet to check the archives. i typically run pymol on unix and os X with no problems. recently, though, i have installed pymol as a module for schrodinger's maestro suite on a PC running XP. has anyone noticed pymol crashing under this configuration? any sug