Great! Looks like a good start. The session log is a good resource too.
Thanks again,
Paul
On Thu, May 6, 2010 at 11:32 PM, Jason Vertrees
wrote:
> Paul,
>
> PyMOL is pretty good at this kind of thing and you can automate it at
> various levels (eg. bash/shell script level, inside PyMOL using P
Hi,
On Tue, Feb 16, 2010 at 08:26:00PM +0100, Daniel Seeliger wrote:
> take a look into
> ~/.ADplugin/pymol_autodock_plugin.conf
> and set the path to the autodocktools scripts correctly. Then the plugin
> should find them.
Speaking of which, I was just taking a look about including your autodo
Autodock VINA works fine in Windows. The PyMOL Autodock plugin does not,
however. There are some issues with Windows-based file naming and
handling that I cannot figure out. The author, Daniel Seeliger, has been
doing developing on a Linux system and does not have a Windows machine
for testing.
Try hex: http://www.loria.fr/~ritchied/hex/
On Fri, May 7, 2010 at 6:48 AM, Sona Vasudevan wrote:
> Hello All,
>
> I would greatly appreciate if anyone can suggest a PC based docking program
> for teaching purposes? I am trying ArgusLab, but that seems too unstable.
>
> Thanks much!
>
> Sona
> -
Hi Sona:
You could try Autodock VINA. Please check the link below for details.
http://vina.scripps.edu/
Deepa
On Fri, May 7, 2010 at 7:48 AM, Sona Vasudevan wrote:
> Hello All,
>
> I would greatly appreciate if anyone can suggest a PC based docking program
> for teaching purposes? I am trying
Hello All,
I would greatly appreciate if anyone can suggest a PC based docking program
for teaching purposes? I am trying ArgusLab, but that seems too unstable.
Thanks much!
Sona
--
Gauri,
Are you looking for a script that will locate contiguous stretches of
a alpha-helical residues and then label one of the atoms in that helix
with the helix's ordinal number? If so, nothing like this exists yet,
but it would be a cool little script to write.
Cheers,
-- Jason
On Thu, May
