Hi Robert,
There's still the basic documentation on the commands, which in the
case of save goes (check the NOTES):
PyMOL>help save
DESCRIPTION
"save" writes selected atoms to a file. The file format is
autodetected if the extesion is ".pdb", ".pse", ".mol", ".mmod", or
".pkl"
Note that if the file extension ends in ".pse" (PyMOL Session), the
complete PyMOL state is always saved to the file (the selection and
state parameters are thus ignored).
USAGE
save file [,(selection) [,state [,format]] ]
PYMOL API
cmd.save(file, selection, state, format)
NOTES
When saving a session file, then "state" has no effect.
When state = 0 (default), only the current state is written.
When state = -1, then a multi-state output file is written (PDB only).
SEE ALSO
load, get_model
By the way, you may want to update the name you use for the user list
in your address book (as in the cc.).
Cheers,
Tsjerk
On Wed, Jun 23, 2010 at 7:04 PM, R. Bryn Fenwick
<robert.fenw...@irbbarcelona.org> wrote:
>
> Hi,
>
> I have a pdb file that has some models in it. when I open this file
> they are read in as frames, however now I would like to write them out
> as frames in a model file. how can i do that?
>
> Many thanks,
>
> R. Bryn Fenwick
>
>
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--
Tsjerk A. Wassenaar, Ph.D.
post-doctoral researcher
Molecular Dynamics Group
Groningen Institute for Biomolecular Research and Biotechnology
University of Groningen
The Netherlands
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