[PyMOL] pymol error for all pdb files

Dear Pymol users, I installed Pymol 1.2 on Ubuntu 9.1 but I have the error as the following for all PDB files. (Select File -> open from the user menu, and select and open that PDB file). *Error: 1* > * Exception in Tk callback* > * Function: instance at 0x9f3270c>> (type: )* > * Args: ()* > *

Re: [PyMOL] Delete states function?

Hi Sean, You're right. The code should be: load structure.pdb #load trajectory with 212 states load structure.dcd #Use half the number of frames and hope that states get skipped by PyMOL mset 1 x106 mview store, 1, state=1 mview store, 106, state=212 Interestingly, PyMOL doesn't like the use

Re: [PyMOL] object matrix not updated with pair_fit

Hi Sean, Use 'fit' instead. # get two sample proteins fetch 1cll 1ggz, async=0 # show their object matrices print cmd.get_object_matrix("1cll") print cmd.get_object_matrix("1ggz") # fit the first 26 AAs via alpha carbons fit 1cll///4-29/CA, 1ggz///4-29/CA # show the object matrices, again prin