Re: [PyMOL] maximum sphere-quality ?

2010-10-28 Thread Tsjerk Wassenaar
Hi, The tutorial states that the quality needs to be increased prior to ray-tracing. But it seems to me that the {sphere,stick}_quality settings apply to the OpenGL rendering, whereas the raytracer uses 'real' spheres and cylinders. Even when setting sphere_quality to 0, 'ray' will still give (nea

Re: [PyMOL] Electron density map

2010-10-28 Thread Jason Vertrees
Hi Saif, I checked the same file in PyMOL and Coot. You're right, there are some differences at the boundaries, but they still look insignificant. Maybe you can point out a residue with a large deviation. For this map, Coot shows large blocks of red/green mesh indicating differences in the obse