Re: [PyMOL] EDS maps switched upon fetch?

2011-04-12 Thread Jason Vertrees
Hi Jared, I wrote that code correctly the first time, then someone convinced me I had done it backwards. It was a small snafu that has been fixed. It's now switched in a patch after v1.3, and works as expected in v1.4+. Cheers, -- Jason On Tue, Apr 12, 2011 at 2:16 PM, Sampson, Jared wrote: >

[PyMOL] EDS maps switched upon fetch?

2011-04-12 Thread Sampson, Jared
Hello all - I have been looking at some electron density from the EDS and wondering why it didn't appear to match up with the coordinates. Then I found that it appears PyMOL (v 1.3), when requesting a "2fofc" map, actually reads in the fofc, and vice versa. Here's a script to illustrate the

Re: [PyMOL] How to color in a different way different helix types?

2011-04-12 Thread Thomas Holder
Hi Hongbo, very nice! Your plugin only accepts named selections, predefined selections like (all), (polymer) or object names do not work. Could you change this? Cheers, Thomas On Tue, Apr 12, 2011 at 4:22 PM, Hongbo Zhu wrote: > Hi, if anybody is still interested in the topic, I have made a

Re: [PyMOL] How to color in a different way different helix types?

2011-04-12 Thread Jason Vertrees
Hi Hongbo, > Hi, if anybody is still interested in the topic, I have made a DSSP > plugin for running DSSP and coloring proteins according to the DSSP > secondary structure assignment. Please have a look at: > > http://www.pymolwiki.org/index.php/DSSP Very nice. Thanks for making and distributin

Re: [PyMOL] How to color in a different way different helix types?

2011-04-12 Thread Hongbo Zhu
Hi, if anybody is still interested in the topic, I have made a DSSP plugin for running DSSP and coloring proteins according to the DSSP secondary structure assignment. Please have a look at: http://www.pymolwiki.org/index.php/DSSP This plugin invokes DSSP (presuming you already have DSSP binary