Re: [PyMOL] labeling dna residues

2011-04-14 Thread Thomas Holder
Hi Leila, "b" is an atom property, so you cannot use it as a selection name. http://pymolwiki.org/index.php/Property_Selectors#Numeric_Selector_Table Cheers, Thomas On Thu, Apr 14, 2011 at 4:04 PM, leila karami wrote: > Dear pymol users > > My system contains protein (chain a) and dna (chain

[PyMOL] labeling dna residues

2011-04-14 Thread leila karami
Dear pymol users My system contains protein (chain a) and dna (chain b). I did following: select a, chain a select b, chain b then in b I labeled residues but: PyMOL>select b, chain b Selector: selection "b" defined with 825 atoms. Selector-Error: Misplaced ). Selector-Error: Malformed select

Re: [PyMOL] (HB) dotted line with out distance number

2011-04-14 Thread João Rodrigues
Hey Leila, The distance is a Label, so if you hide the labels for the distance object is should disappear. Regards, João -- Benefiting from Server Virtualization: Beyond Initial Workload Consolidation -- Increasing the

[PyMOL] (HB) dotted line with out distance number

2011-04-14 Thread leila karami
Dear users I am beginner in pymol. There are some water molecules forming water-mediated hydrogen bond in my system. I want to create a figure in which HBs are indicated by dotted lines. I know I should use dist (atom 1) (atom 2) command. In this case, in addition of dotted line, there is dista

Re: [PyMOL] Volumes video

2011-04-14 Thread Justin Lecher
On 13/04/11 21:24, Jason Vertrees wrote: > Hi all, > > Just a quick note to let you know that I posted a small 5 minute > (silent) basic volumes usage video. The video is on YouTube > (http://www.youtube.com/watch?v=tuAo_8-_HIc) and linked to from the > PyMOLWiki (http://www.pymolwiki.org/index.p