Yes, great trick:
fetch 1avd, type=pdb1
On 05/03/2011 10:22 PM, li...@cowsandmilk.net wrote:
> http://www.rcsb.org/pdb/files/1avd.pdb1
>
> The key is adding 1 to the suffix. Sometimes there is more than one
> biological unit, in which case, there is a pdb2, pdb3, etc.
>
> -David
>
> On May 3, 2
Hi all,
I'm considering building in a mechanism for automatically fetching scripts
from the PyMOL Wiki. The goal is to allow users to say
fetch findSurfaceResidues, type=script
findSurfaceResidues doShow=True, cutoff=0.5
The convenience benefits are obvious, especially for new users, and I think
Hi Everyone,
I am making a movie and want to show the transition between a cartoon and a
ribbon representation smoothly (fading out cartoon and fading in ribbon) .
So I tried writing a simple python script like:
---
for i in range(40,60):
cmd.mdo (i, "set cartoon_transparency,%f" %( 1-(60-i)/
Sounds awesome! Adding an option to chose whether to load the script every
time PyMol launches, or just fetch and use it once, would be even more
convenient. It would resemble installation of packages from Linux
repositories ;)
On 4 May 2011 18:59, Michael Lerner wrote:
> Hi all,
>
> I'm consid
Hi Everyone,
I am making a movie and want to show the transition between a cartoon and a
ribbon representation smoothly. So I tried inserting a simple python script
like:
Methodist. Leading Medicine. Recognized by U.S.News & World Report as one of
America's "Best Hospitals" in 13 specialties.
Hi Sena,
the second argument to mdo was not correct, there you had two strings
and a semicolon what must be one string and the semicolon within. Works
for me like this:
python
cmd.mset("1x100")
cmd.mdo(1,
"set cartoon_transparency, 1.0; set ribbon_transparency, 0.0")
for i in range(40,60):
Hi Michael,
it's a good idea! A working proof-of-concept userland script should be
quick to implement I guess.
I think the design should go together with the planned new plugin
architecture (http://pymolwiki.org/index.php/PluginArchitecture ).
Cheers,
Thomas
Michael Lerner wrote, On 05/04/
Dear all
thanks for the support, this is most helpfull.
Kind regards
Martin
Am 04.05.11 09:38, schrieb Hongbo Zhu:
> Yes, great trick:
>
> fetch 1avd, type=pdb1
>
> On 05/03/2011 10:22 PM, li...@cowsandmilk.net wrote:
>> http://www.rcsb.org/pdb/files/1avd.pdb1
>>
>> The key is adding 1 to th
Hi,
From a security perspective, it seems like the ideas on the wiki page
are all related to securing the remote source. It might be worth
considering what could be done to minimize how much pymol has to trust
the remote source or the network.
A few ideas:
- Sandboxing would be ideal, but
