Please, I have modelled several mutants of a protein with FoldX and I would
like to display the clashes present in each case in PyMol.
I have seen that activating the "mutate" wizard I can display clashes with red
disks, but only for standard rotamers, which are not those tipically used by
Fold
Hi Claudia,
those clash visualizations are drawn by the sculpting routine, so you
have to invoke sculpting in some way to get them.
This python function creates a copy of your selection, does one
sculpting cycle and shows bumps for it:
from pymol import cmd
def show_bumps(selection='(all)'
Hi all,
I'd just like to make it clear that we're not ignoring this problem.
We have not fixed it because like the other Intel GM9x5 bugs, we
cannot ever reproduce them on any machine we've tried--which is close
to a dozen, now. We tried various machines and configurations, but
still cannot get t
