[PyMOL] Performance Tips

Greetings PyMOLers, Ongoing work into PyMOL's graphics engine has given us time to test and learn a few things about performance. If you're a hard-core PyMOL user or you need to get every last frame-per-second out of PyMOL, try loading a large session and tweaking the following settings to check f

Re: [PyMOL] Help: Linux active Stereo on screen seems OK with flickering in pymol window, but glasses dont seem to be shuttering

Hi Hari, Please update your driver and ensure that your monitor's refresh rate is 120 Hz. Cheers, -- Jason On Wed, Jul 20, 2011 at 12:41 PM, hari jayaram wrote: > Hi, > I am using the nvidia driver : 195.36.24 > OS: Ubuntu Lucid lynx 10.04 , 64 bit > I have a "working" xinerama config with two

Re: [PyMOL] save new coordinate

Hi Lina, >> transform_by_camera_rotation > > PyMOL>transform_by_camera_rotation > Traceback (most recent call last): > File "/usr/local/lib/python2.6/dist-packages/pymol/parser.py", line > 464, in parse > exec(layer.com2+"\n",self.pymol_names,self.pymol_names) > File "", line 1, in > Nam

Re: [PyMOL] Help: Linux active Stereo on screen seems OK with flickering in pymol window, but glasses dont seem to be shuttering

Hi Hari, According to the NVidia's website, the Planar SA2311W is compatible with 3DVision since the version 260.19.36 of the Nvidia's video driver. Apparently the driver you're using is a way too old . Rafael. On 7/20/11 6:41 PM, hari jayaram wrote: Hi, I am using the nvidia driver : 195.36

[PyMOL] Help: Linux active Stereo on screen seems OK with flickering in pymol window, but glasses dont seem to be shuttering

Hi, I am using the nvidia driver : 195.36.24 OS: Ubuntu Lucid lynx 10.04 , 64 bit I have a "working" xinerama config with two LCD screens one a regular dell LCD at 2560x1600 and the other a stereo capable PLANAr LCD at 1920x1080. Both screens were configured to near working stereo based on the xor

Re: [PyMOL] save new coordinate

On Wed, Jul 20, 2011 at 5:21 PM, Thomas Holder wrote: >> Thanks, but I still failed to get this new pdb. >> >> File -- Save molecular --> >> >> I wish the present coordinate will be saved as a new pdb after rotation. > > I guess with present coordinate you mean what you see on screen. To get this

Re: [PyMOL] save new coordinate

> Thanks, but I still failed to get this new pdb. > > File -- Save molecular --> > > I wish the present coordinate will be saved as a new pdb after rotation. I guess with present coordinate you mean what you see on screen. To get this you need to transform the atom coordinates by current camera