Re: [PyMOL] NUmber

2011-09-21 Thread Tsjerk Wassenaar
Hi Suda, Do you mean the number of residues in helix c.q. sheet or the number of helices and the number of sheets? The former is pretty easy. You can do select ss s select ss h to get the numbers for sheet and helices, respectively. To use the numbers in a script, use cmd.select('ss s') and

[PyMOL] A quick Q: zoom

2011-09-21 Thread lina
Hi, I tried to zoom in, make it large, but seems not work, neither, zoom zoom complete 1 or 0 zoom center Thanks for some suggestions, -- Best Regards, lina -- All the data continuously generated in your IT

Re: [PyMOL] A quick Q: zoom

2011-09-21 Thread Thomas Holder
Hi Lina, if you are looking for a way to zoom in, use your right mouse button or type: move z, 10 The zoom command however will set the current view to cover the given atom selection (or all if no selection is given). http://pymolwiki.org/index.php/Move http://pymolwiki.org/index.php/Zoom

Re: [PyMOL] A quick Q: zoom

2011-09-21 Thread lina
On Wed, Sep 21, 2011 at 11:02 PM, Thomas Holder spel...@users.sourceforge.net wrote: Hi Lina, if you are looking for a way to zoom in, use your right mouse button or type: Thanks, are there some command is equal to the right mouse button? just curious. move z, 10 it's not so simple to

Re: [PyMOL] SASA calculation in Pymol

2011-09-21 Thread Jason Vertrees
Hi Horacio, a) where could we find information about the SASA method it uses so we can speed and accuracy increment test with our own method http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg01618.html