[PyMOL] Automating pymol through PERL

2011-09-29 Thread Anasuya Dighe
Hello, I have a .txt file which has data in the following fashion: 19gs BSP A 1 1a2d PYX A 117 9rsa ADU A 125 7kme PRR J 382 1a0r ACE B 1 1a0r FAR G 72 . . . Fields: PDB ID LIGAND NAME CHAIN TO WHICH IT

Re: [PyMOL] Automating pymol through PERL

2011-09-29 Thread Tsjerk Wassenaar
Hi Anasuya, This sound like one of those very good reasons to have a go at Python, and leave Perl behind... Together with all the plain reasons to leave Perl behind :) First of all, check http://xkcd.com/353/ Assuming the file is called list.txt and you have all pdb files at hand (which is not

Re: [PyMOL] distance bug

2011-09-29 Thread Abhinav Verma
Hi, My pymol 1.4.1 works fine. can you try to ray trace and see if your objects are available but just not displayed on the standard screen? cheers, 2011/9/29 Andreas Förster docandr...@gmail.com Hi all, Has anyone noticed that the distance command behaves oddly. Has this been recently

Re: [PyMOL] distance bug

2011-09-29 Thread Jason Vertrees
Hi Andreas, It was a bug with the invalidation system. I just pushed a fix to source forge. Thanks for bringing this to our attention. Cheers, -- Jason 2011/9/29 Andreas Förster docandr...@gmail.com: Hi all, Has anyone noticed that the distance command behaves oddly.  Has this been

Re: [PyMOL] distance bug

2011-09-29 Thread Andreas Förster
Ah, indeed, the latest revision 3969 has a correctly working distance command. Thanks Jason. Andreas On 29/09/2011 3:08, Jason Vertrees wrote: Hi Andreas, It was a bug with the invalidation system. I just pushed a fix to source forge. Thanks for bringing this to our attention.