how do i put a protein molecule inside a cube with x-axis spanning till the
largest x-coordinate, y-axis spanning till the largest y-coordinate, and z-axis
spanning till the largest z-coordinate?
Once i do this, can i divide the larger cube(i.e. the one holding the entire
protein) into smaller
Hi Robert,
this solves exactly my problem and gives me the pictures I wanted.
Thank you very much for the quick answer!
Cheers,
Alexander
Am Mittwoch, den 26.10.2011, 09:48 -0400 schrieb Robert Campbell:
Hi Alexander,
On Wed, 2011-10-26 12:53 EDT, Alexander Schulz
Hi Anasuya,
how do i put a protein molecule inside a cube with x-axis spanning till the
largest x-coordinate, y-axis spanning till the largest y-coordinate, and
z-axis
spanning till the largest z-coordinate?
Once i do this, can i divide the larger cube(i.e. the one holding the entire
Hey :)
Does the script pasted below do what you want? It does not move the
molecule(s), but it returns a list of occupied bins with the ids,
names and chains of residues in it.
Hope it helps,
Tsjerk
###
from pymol import cmd
def _bin(x,d):
d = float(d)
a,b,n =
Right, forgot to mention that the bin is given as the coordinates of
the lower corner, relative to the minimal coordinates.
Cheers,
Tsjerk
On Thu, Oct 27, 2011 at 6:02 PM, Tsjerk Wassenaar tsje...@gmail.com wrote:
Hey :)
Does the script pasted below do what you want? It does not move the
I have a problem with lighting (I think) CGO lines, e.g.,
lineSet = [
LINEWIDTH, 0.30,
BEGIN, LINES,
VECTOR, 0.0, 0.0, 0.0,
VECTOR, 1.0, 1.0, 1.0,
END,
]
cmd.load_cgo( lineSet, 'LineSet' )
For some reason, lines appear crisp from one angle, and strangely distorted
from
