Stephane,
COM should return the coordinates:
theCenter = COM(...)
pseudoatom theAtom, pos=theCenter
Cheers,
-- Jason
On Mon, Nov 14, 2011 at 5:44 PM, ABEL Stephane 175950
wrote:
> Thank you Jason and Troels for your quick response.
>
> I have an additional question. Now if i want to pass the
Thank you Jason and Troels for your quick response.
I have an additional question. Now if i want to pass the COM coordinates x, y
and z obtained with the COM script in the pseudoatom pos. For example to use
in the script
How i can do that ?
Thank you again for your response.
Stephane
--
Stephane,
Create a psuedoatom and specify the coordinates:
pseudoatom myCentralAtom, pos=[X,Y,Z]
pseudoatom myCentralAtom, pos=[10.20, -14.2, 0.44]
Cheers,
-- Jason
On Mon, Nov 14, 2011 at 4:33 PM, ABEL Stephane 175950
wrote:
> Dear all,
>
> I have a simple question but i have found no respo
Using pseudo atoms
http://www.pymolwiki.org/index.php/Pseudoatom
using pos=
pseudoatom tmpPoint2, resi=40, chain=ZZ, b=40, color=tv_blue, pos=[-10, 0, 10]
Troels Emtekær Linnet
Slotsvej 2
4300 Holbæk
Mobil: +45 60210234
2011/11/14 ABEL Stephane 175950
> Dear all,
>
> I have a simple ques
Dear all,
I have a simple question but i have found no response: i have downloaded a
pymol script COM.py from the pymol wiki to obtain the coordinates x, y and z of
the center of mass of my protein. Now i would like to create a dummy at these
coordinates. How to do that with pymol ?
Thank for
Strange, yesterday I did a quick test and it didn't work. But here on my
main machine everything is fine.
Sorry for the noice.
jsutin
On 13/11/11 17:48, Jason Vertrees wrote:
> Hi Justin,
>
> It works; see
> http://www.pymolwiki.org/index.php/File:Cartoon_side_chain_helper_on.png.
> You just h
