check this out:
http://www.pymolwiki.org/index.php/InterfaceResidues
if you want faster and easier, but less reliable (in my opinion) way, you
can analyze your .pdb with PISA:
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
vitali
On Sun, Nov 20, 2011 at 1:51 AM, rjayashree13-scie...@yahoo.co.in <
rjayashree13-scie...@yahoo.co.in> wrote:
> I have a PDB file for a dimeric protein. Is it possible to depict the
> intersubunit contacts for any PDB file? Is Pymol alone sufficient for this
> purpose or will it only help visualization?
> Could you also tell me which commands in Pymol can I use for this purpose?
> I have tried a lot but could not get an answer to this. I will be very
> thankful for the favour.
>
> Dr. Jayashree Ramana
>
> <http://www.juit.ac.in/bio/jsr.php>
>
>
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>
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------------------------------------------------------------------------------
All the data continuously generated in your IT infrastructure
contains a definitive record of customers, application performance,
security threats, fraudulent activity, and more. Splunk takes this
data and makes sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-novd2d
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