[PyMOL] Installation PyMOL failure in Linux (CentOS)

2011-12-01 Thread grantaka36
Referring the following, I'm trying to install PyMOL 1.4.1 with attached 'compile_pymol.sh', but no success. Would you please help to finish installation, or give me some advices? If information inadequate, please contact me. http://www.pymolwiki.org/index.php/Linux_Install - Requirements - Get la

Re: [PyMOL] Electron density maps

2011-12-01 Thread Jason Vertrees
Hi Sree, After your map is loaded click: Wizard > Density. The map will replicate according to the symmetry operators. Cheers, -- Jason On Thu, Dec 1, 2011 at 12:53 PM, SREEJESH SHANKER wrote: > Hi > > I am having trouble to generate an electron density map (2FoFc) around some > selected resid

[PyMOL] Electron density maps

2011-12-01 Thread SREEJESH SHANKER
Hi I am having trouble to generate an electron density map (2FoFc) around some selected residues and metal ion ligand. I have data as MTZfile which I use to generate my map using FFT in ccp4i then further add a .ccp4 extension for pymol to read. Then I give the map double command select the resid

Re: [PyMOL] change cartoon transparency for only a selection

2011-12-01 Thread Jason Vertrees
Hi Kristoffer, Cartoon transparency is an object-level property. You can use this trick though: http://pymolwiki.org/index.php/Cartoon#Various_Transparency_Levels. Cheers, -- Jason On Thu, Dec 1, 2011 at 10:34 AM, essolini wrote: > Greetings! > > I have a problem with Pymol driving me crazy,

[PyMOL] change cartoon transparency for only a selection

2011-12-01 Thread essolini
Greetings! I have a problem with Pymol driving me crazy, and I hope someone is able to help me. Is there a way of displaying selected residues in a cartoon structure with another transparency than the rest? I have tried to make a selection of residues from an object (let's call it sel), and then