Hi Jacob,
I fixed the color_obj script in the wiki, it had a bug.
Btw. I like Tsjerk's suggestion best, using b-factors.
Cheers,
Thomas
Jacob Keller wrote, On 12/19/11 03:38:
Dear Pymol list,
I have been trying to color the states in a morph by spectrum to try
to show the motion in
Dear Colleagues,
We are pleased to announce the fifth annual CCP4 summer school at Advanced
Photon Source (APS), Argonne National Laboratory (ANL). All details can be
found at http://www.ccp4.ac.uk/schools/APS-2012/
Title:
CCP4 school: From data collection to structure refinement and beyond
Hi Everyone,
I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running Snow
Leopard), but pymol keeps crashing. The compilation looks clean, so I have
no idea why it's giving me trouble. I have pasted the details below. Any
help would be much appreciated. Thanks!
~Lauren
Python
2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to
uncaught exception 'NSInvalidArgumentException', reason*:
'-[GLUTApplication _setup:]:* unrecognized
--
Do you have glut installed ?
Hi all
Is it possible to put a crosshairs at the center of the viewing area that
always shows where the center is?
Thanks!
F
-
Francis E. Reyes M.Sc.
215 UCB
University of Colorado at Boulder
Hi Francis,
you could use a pseudoatom (or CGO object) and a callback that
constantly updates the position.
python
from pymol import cmd
cmd.pseudoatom('crosshair', pos=(0,0,0))
cmd.show_as('nonbonded', 'crosshair')
def crosshair_put_center():
t = cmd.get_position()
m = [1, 0, 0,
Jacob Keller wrote, On 12/19/11 19:04:
Yes, now it works perfectly--thanks very much! Also, did you see some
advantage of doing the b-factor idea over your script, or just a good
parallel strategy?
it's just a good parallel strategy. And is done with 2 lines instead of
loading an extra
Yes, I have GLUT installed (I'm using the framework), and I rerouted
everything to make sure it was pointing to the right path. After doing
that, I rebuilt and got a new error:
Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49)
[GCC 4.2.1 (Apple Inc. build 5646)] on darwin
Type help, copyright,
Yes, now it works perfectly--thanks very much! Also, did you see some
advantage of doing the b-factor idea over your script, or just a good
parallel strategy?
Jacob
On Mon, Dec 19, 2011 at 2:41 AM, Thomas Holder
spel...@users.sourceforge.net wrote:
Hi Jacob,
I fixed the color_obj script in
Dear Pymol Users,
I have 6 GB of RAM, but I am still getting crashes when I try to
render my 30-state figure, even when I don't raise the hash_max
(lowering it makes it take really long). When I look at the task
manager to see how much RAM is being used, it still is very far from
being maxed out,
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