Re: [PyMOL] Protein-ligand interactions

2012-01-22 Thread James Starlight
Thanks Thomas I've just one extra question about ligand sites. As I've said previously I can obtain information about polar contacts between ligand and its surrounding residues via Present- ligand sites. On the next step I mask all other non relevant parts of the protein ( wich are represented a

[PyMOL] Mutagenesis wizard

2012-01-22 Thread James Starlight
Dear PyMol users! I've desided to make this topic for my questions linked with the mutagenesis wizard setup. First of all I've already tried to make some point mutations in my proteins and all worked perfect. I just want ask about definition of the new torsions for the mutated residue. E.g I hav

Re: [PyMOL] sequence in the image

2012-01-22 Thread Jason Vertrees
Hi Osvaldo, There is currently no way to do this. If you'd like to see it implemented, please file it on the PyMOL open-source feature tracker. Cheers, -- Jason On Fri, Jan 20, 2012 at 8:21 PM, Osvaldo Martin wrote: > Hi, > > PyMOL has an option to save the current view as an image, but it is