Hi,
Why can't you use set_name tun1, ..., etc? The attempt trying to change
names is quite odd, and won't do what you want anyway.
You could use
basename=your_tag
cmd.set_name(cmd.get_object_list()[0], basename+_subtag)
... and so on.
Cheers,
Tsjerk
On Mar 21, 2012 6:56 AM, Sajeewa Pemasinghe
Hi everyone,
I have a set of (240 files) of pse files like
1.pse
2.pse
.
.
.
240.pse
I also have a set of(240 files) pml files like
1.pml
2.pml
.
.
.
240.pml
I want execute the pml files iteratively on the corresponding pse files and
save the new pse files as 1new.pse,2new.pse, so on. from
Hi James,
Pymol adds a TER statement at the end of each continuous piece of the protein.
Cheers,
Tsjerk
2012/3/21 James Starlight jmsstarli...@gmail.com:
Hi Tsjerk,
I'm not quite understood if pymol adds TER enty after residues wich consist
of missing atoms or in the place with the missing
Hi Sajeewa,
paste this into a python script (script.py):
from pymol import cmd
for i in range(1, 240+1):
cmd.reinitialize()
cmd.load('%d.pse' % i)
cmd.do('@%d.pml' % i)
cmd.sync()
cmd.save('%dnew.pse' % i)
Run it with PyMOL in batch mode:
pymol -cqr script.py
See
Oh, please nevermind. I've already got it sorted. Thank you.
Suhaila
Date: Wed, 21 Mar 2012 06:31:40 +0100
Subject: Re: [PyMOL] Error running Contact Map Visualizer Plugin
From: tsje...@gmail.com
To: bell_beaut...@hotmail.com
CC: pymol-users@lists.sourceforge.net
Hi Suheila,
What were the exact
Hi everyone,
I am trying to run pymol in the batch mode from the command line using
pymol -cqr script.py
But I get the following errors. Could you please advice me how to prevent
these errors?
Traceback (most recent call last):
File string, line 1, in module
ImportError: No module named pymol
Nobody has replied this yet. I still need to know.
Cheers,Suhaila.
From: bell_beaut...@hotmail.com
To: pymol-users@lists.sourceforge.net
Subject: Query of running script of Contact Map Visualizer Plugin
Date: Wed, 21 Mar 2012 00:41:20 +1200
Hello
I know the plugin mentioned above (in
