Hi Malai,
Thanks for bringing this to our attention. The file you sent does have
a TER record (which separates chains) but it went ahead and
re-declared chain A. This confused PyMOL. You can easily correct this
by forcing PyMOL to start a new model. Just insert,
ENDMDL
on line 4379 of your file.
Sorry for the double post. Forgot to change the subject line in the last
and also pasted the wrong link... Anyway, check for discontinuous SEGIDs
and here is the old thread.
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07683.html
Eric
On Jul 23, 2012 6:32 AM, "Eric Larson" w
Hi Malai,
Do you happen to have values in the SEGID column of your pdb file? If so,
simply delete them. Not sure if pymol still behaves the same but this used
to cause problems with cartoon rendering. See this old post:
http://www.google.com/search?hl=en&redir_esc=&client=ms-android-verizon&sou
Hi Anasuya,
"br." is short for "byres" (by residue). So just drop that from your
selection expression.
select site, (resn FAD and chain A and resi 45) around 4.5 and not HET
Cheers,
Thomas
Anasuya Dighe wrote, On 07/23/12 09:00:
> Hi Pymol-users,
>
> I need to select only the atoms [and NO
Hi Pymol-users,
I need to select only the atoms [and NOT complete amino acid residues] which are
lying in a radius of 4.5 Angstroms from the ligand from a ligand-bound protein
structure.
I am aware that the command: select site, br. resn FAD and chain A and resi 45
around 4.5 and not HETselect
