Re: [PyMOL] question

2012-09-19 Thread Thomas Holder
Hi Mona, I am very interested to here if it is possible to align a stick structure with a cartoon strucrture in Pymol? structure alignment is independent of visual representation. So yes, you can align a stick structure to a cartoon structure. Is it possible to put the short aa code or name

Re: [PyMOL] question

2012-09-19 Thread Jordan Willis
Was my message received by the pymol group about combining camera and object motions at the same time? It said it was held for review. I have copy myself on the mailman server, but I never seem to receive my own posting. Jordan On Sep 19, 2012, at 5:35 AM, Thomas Holder wrote: Hi Mona, I

Re: [PyMOL] Question about mutagenesis wizard

2012-09-19 Thread Troels Emtekær Linnet
Hi. I tried a little: *test1.pml* # See http://www.pymolwiki.org/index.php/Peptide_Sequence # See http://www.pymolwiki.org/index.php/propka reinitialize cd C:\Users\tlinnet\Desktop python for aa in CVGLTSW: cmd._alt(string.lower(aa)) python end create pdb1, cys remove cys delete cys save