Re: [PyMOL] Can't undo anymore

2012-10-23 Thread Joel Tyndall
Hi Again, Thanks Jason for the update. Turns out PyMOL is not broken, but undo is simply turned off. See below for details. In version v1.5 we added a better undo. However, to stop it from eating up all your RAM we disabled it for very large systems like proteins. Since it's PyMOL you can alw

Re: [PyMOL] wire-mesh spheres?

2012-10-23 Thread Matthew Baumgartner
Hi, Is it now possible to have wire mesh cgo object spheres in pymol? I found this thread from a while ago (2004) but googleing, I didn't find anything more recent. The one sort of work around that I though of was to create pseudo-atoms and somehow modify their radius and then show them as mesh.

Re: [PyMOL] Custom menus and shortcuts?

2012-10-23 Thread Jason Vertrees
Hi Boris, David Hall's suggestions are perfect. Let me offer one more. If you can put up with programming a little Python, check out pymol/modules/pymol/menu.py and pymol/modules/pymol/preset.py. In menu.py you could add a "No W" menu option (or similar) to the A > Preset > Cheers, -- Jason On

Re: [PyMOL] Custom menus and shortcuts?

2012-10-23 Thread Boris Kheyfets
Found a solution. Basically it is to add pmg_tk/startup/newmenu.py file with the following content: from Tkinter import * from pymol import cmd def __init__(self): self.menuBar.addmenu('NewMenu', 'Sample Menu') self.menuBar.addmenuitem('NewMenu', 'command', 'White

Re: [PyMOL] Custom menus and shortcuts?

2012-10-23 Thread David Hall
http://pymolwiki.org/index.php/Set_Key http://pymolwiki.org/index.php/Extend is also useful. -David On Tuesday, October 23, 2012 at 6:02 AM, Boris Kheyfets wrote: > Hello PyMOL users, > > Menus > = > > Is there a way I can add custom menu in PyMOL? > > Ideally I'd like to be able to c

[PyMOL] Custom menus and shortcuts?

2012-10-23 Thread Boris Kheyfets
Hello PyMOL users, Menus = Is there a way I can add custom menu in PyMOL? Ideally I'd like to be able to call both * pml scripts, as well as * full python pymol scrpts Shortcuts = Similarly -- is there a way I can bind exectution of given * pml script, or * full python pymol scri