Hi Appu,
if I understand you correct then you have a structure with at least two
domains. If you align two conformations of that structure, one domain
does not get superposed nicely. Right?
The psico module provides the command angle_between_domains, which
is what you are looking for I guess.
Dear All,
I am trying to create a electron density map for the pdb file which is not
deposited in RCSB bank, however I do not find any option on
http://eds.bmc.uu.se/eds/. Is there any way to get density map for the pdb
files which are not deposited in pdb data bank?
All the best,
Mehdi
Hi mehdi.
Look for inspiration here.
http://www.pymolwiki.org/index.php/Dynamic_mesh
fetch 1HWK, async=1
fetch 1HWK, 1hwk_map, type=2fofc, async=1
Best
Den 01/11/2012 18.09 skrev Mehdi Talebzadeh Farooji mahdi...@yahoo.com:
Dear All,
I am trying to create a electron density map for the pdb
