Re: [PyMOL] Software crashing when opening .pse files

2012-11-02 Thread Jason Vertrees
Hi Mark, PyMOL Session files store their settings. So, if you're running PyMOL on a powerful desktop machine that has OpenGL shader-based technology and then save that file, the high-performance graphics settings will be saved. If you then try to open that session file on a low-end laptop, say, wh

Re: [PyMOL] Mobile PyMOL Problem and Solution

2012-11-02 Thread Mike Marchywka
> From: jason.vertr...@schrodinger.com > Date: Fri, 2 Nov 2012 18:57:38 -0500 > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Mobile PyMOL Problem and Solution > > Greetings, > > On Oct 28th, the folks at the PDB made some changes to their PD

[PyMOL] Mobile PyMOL Problem and Solution

2012-11-02 Thread Jason Vertrees
Greetings, On Oct 28th, the folks at the PDB made some changes to their PDB Web Services interface. This change broke Mobile PyMOL's ability to search for and download PDBs. I have updated Mobile PyMOL and will soon resubmit it to the AppStore for verification and release. This process takes typi

Re: [PyMOL] Ray-trace of volume visualization

2012-11-02 Thread Jason Vertrees
Hi Per, set ray_volume, 1 We disabled this feature because it wasn't of high enough quality to be used. Once we fix this, we'll change PyMOL to automatically ray trace the volumes. Until then, you can try the trick I noted above. If you feel like sharing I'd love to see what you came up with. C

[PyMOL] Software crashing when opening .pse files

2012-11-02 Thread Mark Bostock
I have pymol 1.5 installed on windows 7 (32 bit). The install works fine with .pdb files, however if I try to open a session file (.pse) created on another machine (windows xp, also running pymol 1.5) the software crashes; there are no error messages in the pymol command line. The programme jus

[PyMOL] Ray-trace of volume visualization

2012-11-02 Thread Per Larsson
Hi! Following up on my earlier post http://sourceforge.net/mailarchive/message.php?msg_id=30017929, I have managed to make some very nice volume visualizations in Pymol. I now wonder about the possibilities of ray-tracing the volume? I should add that I'm not a graphics guru, so maybe this doe