[PyMOL] Export to COLLADA format

Hi all - I'm working on generating some interactive 3D figures, and have found that PyMOL is able to write .obj and .wrl files, which is nice. However, I would like to be able to use COLLADA (.dae) format. I have found tools (MeshLab and Blender, for example) that can convert among various fo

Re: [PyMOL] setting the cutoff radius that determines when atoms are bonded

Not sure what I was doing wrong before, but that worked like a charm! Thanks. Also, pyMol is really sweet. I've been bugging my group to use it for a few days now. :D Cheers, Rye On Tue, Dec 4, 2012 at 11:40 AM, Jason Vertrees < jason.vertr...@schrodinger.com> wrote: > Hi Rye, > > set connect_

Re: [PyMOL] setting the cutoff radius that determines when atoms are bonded

Hi Rye, set connect_cutoff, 0.5 load 1.xyz produces different bonding than if you left the connect_cutoff value to its default, 0.35. Set it to 0.85 and then load the file and you'll see the Unknown atoms in the middle bonded as well. Cheers, -- Jason On Tue, Dec 4, 2012 at 11:33 AM, Rye Terr

Re: [PyMOL] setting the cutoff radius that determines when atoms are bonded

Hi Jason, Thanks for the tip. I still couldn't get it to work. I'll google around some more, but here's the file. Thanks for any help. Cheers, Rye On Mon, Dec 3, 2012 at 4:34 PM, Jason Vertrees < jason.vertr...@schrodinger.com> wrote: > Hi Rye, > > How about connect_cutoff in Å? There's also c