Re: [PyMOL] drawing a bond between the same Calpha atom in different states

2012-12-14 Thread Tsjerk Wassenaar
Hey :) Can't resist the challenge... For any given ensemble, you can draw a trace through the C-alphas using the following lines, illustrated here for the NMR ensemble '1NMR': # Get the structure fetch 1nmr # Get the number of states n = cmd.count_states('1nmr') # Collect the C-alpha coordinate

Re: [PyMOL] drawing a bond between the same Calpha atom in different states

2012-12-14 Thread Tsjerk Wassenaar
Hi Jon, You also have to update the three numbers before. So to go from white to blue is cmd.load_cgo([i for j in x for u,v,f in zip(j,j[1:],range(n)) for i in [9.0]+u+v+[1.3, 1-(1.*f)/n,1-(1.*f)/n,1, 1-(1.+f)/n,1-(1.+f)/n,1 ]],"trace") If you want to go from blue to white to red, it's proba

Re: [PyMOL] Viewing PyMol in 3D

2012-12-14 Thread Sabuj Pattanayek
> It takes a bit of understanding. Am I correct that if the monitor does > not have a built in emitter, the glasses need to be triggered from > either a remote transmitter plugged into the 3 pin mini din port of a > suitable quadro card for quad buffered, or to a USB port in the case of > consumer