What does Chimera do? I finally wrote my own c++ tool that let's a TcL script
specify a molecule's layout in terms of relevance like bond length and angle.
I decided it was worth the effort since I didn't want to look around much for
existing
stuff and would eventually add my own stuff for analysis. The real decision was
to learn python or just use TcL. I guess if I was looking for a tool to
generate
from a script I'd probably prefer python. Thanks.
----------------------------------------
> Date: Fri, 28 Dec 2012 05:42:27 -0800
> From: jmsstarli...@gmail.com
> To: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] Building of the Carbon lattice
>
> Hi Tsjerk!
>
> This is the example of such lattice which I've built using Chimera!
> http://imageshack.us/photo/my-images/543/lattice.png/
>
> this is simple model of the Carbon-contained lattice without hydrogens.
> So I'd like to build such lattices from different atoms as nodes
> defining only atom type as well as number of nodes.
>
> Also I'd like to simulate this model using PBC so it seems that big
> dimensions of such lattice doesn't matter, doesn’t it ? ( It will be
> simpler to build smaller symmetric model )
>
> James
>
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