Hi,
When I display ccp4 maps in pymol they look a bit larger than I am used to
seeing in coot for a given sigma setting. Is it common for users to
increase the sigma setting when displaying maps in pymol?
--
Yarrow Madrona
Graduate Student
Molecular Biology and Biochemistry Dept.
University
On Wed, Feb 20, 2013 at 2:21 PM, Yarrow Madrona amadr...@uci.edu wrote:
When I display ccp4 maps in pymol they look a bit larger than I am used to
seeing in coot for a given sigma setting. Is it common for users to
increase the sigma setting when displaying maps in pymol?
Have you tried:
set
Unless the values have changed since I last checked the documentations,
by default pymol contours maps at 1.0 sigma and coot defaults to 1.5
sigma (for non-difference maps).
Pete
Yarrow Madrona wrote:
Hi,
When I display ccp4 maps in pymol they look a bit larger than I am used to
seeing in
Hi everyone,
I was wondering if there is an easy way to show distances as a function of
state. As you show each state (using the play button or mplay), can you show
the distance measurement changing? For now it just keeps the distance of the
first state shown. I could script this but first
Hi Jordan,
distance measurements actually should be multistate by default. Do you
create those with a script and provide the state argument?
# create multi-state measurement (default)
distance test, pk1, pk2, state=0
# create only for state 1
distance test, pk1, pk2, state=1
Cheers,
Thomas
