Hi Matthias, I can at least try and answer some of your questions:
1. You can simply click on the command button (rhs side grey window...
"Command" "Builder" "Volume") to get back to the command info you want.
Alternatively type in your commands into the viewer window and use escape to
s
Hi Martin,
only distance measures can draw dashed lines in PyMOL, so try this:
unbond elem W, elem C
show sticks
show sphere, elem W
distance transbonds, elem W, elem C
hide label
set dash_round_ends, off
set dash_radius, 0.2
set dash_length, 0.4
set dash_gap, 0.15
ray
The dashes will display as
Dear PyMOL Users
If you load these coordinates in PyMOL
HETATM1 W LIG 1 -1.357 -0.079 0.052 1.00 0.00 W
HETATM2 C LIG 1 -0.713 -1.686 1.008 1.00 0.00 C
HETATM3 C LIG 1 -0.323 -1.855 -0.270 1.00 0.00 C
HETA
Hi Martin,
PyMOL> alter elem W, vdw=2.0
PyMOL> rebuild
Cheers,
Thomas
Martin Hediger wrote, On 02/26/13 08:38:
> Hi PyMOL users
>
> If I display these coordinates
>
> HETATM 38 C LIG 2 1.535 2.288 -4.156 1.00 0.00 C
> HETATM 39 C LIG 2 2.284 1.5
