Hi Yeping -
Try using:
fetch 2buk, type=pdb1, multiplex=1, async=0
This will fetch the biological assembly (type=pdb1) from the pdb, split the 60
states into separate objects (multiplex=1), and tell PyMOL to wait for all this
to be completed before moving to the next command in a .pml script (
Hi all,
I am looking for pymol scripts for showing coarse grained representation of
non-protein molecules. I am currently using the sphere representation for each
bead, but the bond between two beads are not shown, so it does not nice
figures.
Can you help me or give some advices
Thanks yo
Hi Yeping and Troels,
symexp is unlikely to give you the REMARK 350 biomolecule, it is for
generating neighboring symmetry mates of the crystallographic packing.
The following scripts from the PyMOLWiki can read REMARK 350 and
generate the biological unit:
http://pymolwiki.org/index.php/Psico ->
Hi Yeping,
Searching for "pymol biomt" gives this page on the pymol wiki:
http://www.pymolwiki.org/index.php/BiologicalUnit
Should have all the information you need.
Best regards,
Folmer
2013/2/28 yp sun
> Dear pymol users:
>
> Usually pymol can show only one chain when you open a pdb file
Dear pymol users:
Usually pymol can show only one chain when you open a pdb file of virus
particles (such as 2buk,1sva, etc.). I am trying to create the whole virus
particle and I know it may need applying symmetry operations. And these
symmetry operation has been given in the pdb files. For e