Hi Ananya,
if you really want CA-CA distances of *each residue*, it will be a few
lines of scripting:
xyz_initial = cmd.get_model('initial & guide').get_coord_list()
xyz_final = cmd.get_model('final_copy & guide').get_coord_list()
from chempy import cpv
for xyz_pair in zip(xyz_initial, xyz_final
Hi Jordan,
if the movie has not been interpolated yet, they are interchangeable.
But if you change camera positions in an already interpolated movie,
"interpolate" will do nothing, but "reinterpolate" will.
Example:
unset movie_auto_interpolate
unset movie_auto_store
fragment ala
set_view ( 1.
Hi Jordan,
impressive Movie :) I don't exactly know what the problem is, it's a lot
of code. But a few thoughts:
"rotate" and "translate" have a "camera" argument and can either work in
model space, or in camera space. Default is camera=1. So if you want
those to operate independant of camera vie
Dear Bernhard,
I'm certainly not one of the Pymol 3D experts, but I've done a a few 3D
movies in Pymol for presentations with a 3D projector. It's not much
different from creating non-3D videos, only difference is the movies
contains the two images side-by-side. Youtube assumes 'Cross-Eye Stere
Hi Spencer,
thanks for the feedback.
Do you know the "organic" keyword? This should usually match what you
consider the ligand. It will not distinguish between covalently bound
and not covalently bound, though.
select ligand, organic & !(bymol polymer)
select ptm, organic & (bymol polymer)
Chee
Dear Pymol Experts,
As an activity for the International Year of Crystallography 2014 , a
colleague of mine
would like to produce a 3D movie that can be uploaded to the YouTube 3D
channel from pymol
and/or povray. We would like to know if this is (a routine action / possible
/ or a development t
