[PyMOL] Trouble with saving mol2 format

2013-09-18 Thread Jacob Pessin
Hi, I've come across an issue saving .mol2 ( @ ) files. MGL tools' PMV/ADT won't read them, babel/open babel issues a set of complaint and read errors. If I am reading the format correctly then ... In the atom content the columnation appears to be off after the X Y Z coordinates, the question

[PyMOL] rna cartoon rectangle morph

2013-09-18 Thread jp d
hi, i have a PDB with a morph of an RNA molecule in about 30 states. when i display each state separately the cartoons are smooth. however when i load the morph and display it in cartoon rectangle it will have occasional 'twists'. this is also true for oval,arrow and dumbbell. is there some setti