Re: [PyMOL] Corrupted IDTF file from small molecule (sticks representation)

2014-02-12 Thread Robert Hanson
My only real objection is that WebGL is not supported on iOS in browsers. Beyond that, I probably just don't know enough about it to do it right. On Wed, Feb 12, 2014 at 1:50 PM, Thomas Holder < thomas.hol...@schrodinger.com> wrote: > Hi Bob, > > On 10 Feb 2014, at 20:43, Robert Hanson wrote: >

Re: [PyMOL] Corrupted IDTF file from small molecule (sticks representation)

2014-02-12 Thread Thomas Holder
Hi Bob, On 10 Feb 2014, at 20:43, Robert Hanson wrote: > I haven't explored JyMOL, but I guess it has the potential to do that, and > like Jmol could probably be converted to JavaScript. I don't know. But I'm > guessing it uses WebGL which isn't an adequate solution in my opinion. > Thomas...?

Re: [PyMOL] apbs plugin

2014-02-12 Thread jp d
hi, if i enable debugging i get a little more info get_default_location will search the following :  ['/xtal/programs/pymol/ext', '/xtal/programs/pymol/ext/share/pdb2pqr', '/xtal/programs/pymol/ext/bin', '/sw/share/pdb2pqr', '/sw/share/apbs/tools/manip', '/sw/share/apbs-mpi-openmpi/tools/mani

Re: [PyMOL] apbs plugin

2014-02-12 Thread Thomas Holder
Hi jpd, I can reproduce this, unfortunately. Thanks for reporting. It's indeed a problem with the GUI toolkit and not apbs itself. We are looking into it. Cheers, Thomas On 11 Feb 2014, at 16:21, jp d wrote: > hi, > good idea, it runs from the command line after adding > /pymol/ext/lib to m