Re: [PyMOL] Pymol wrl output

Hi Jared everyone, First, thanks for all your help. I really appreciate it and am sorry to be such a noobie here... I am using the Pymol GUI (1.7). I've created a shared folderhttps://drive.google.com/folderview?id=0B122hIUVdAXaWHN1X3dkS2VrQ1kusp=sharingwith all my files so you can test with

Re: [PyMOL] Pymol wrl output

Have you tried doing show as surface It appears the wrl file has a bunch of extra information from the cartoon representation, which could confuse shapeways? -David On Sun, May 4, 2014 at 4:49 AM, Grateful Frog gratefulf...@gmail.comwrote: Hi Jared everyone, First, thanks for all your

Re: [PyMOL] Pymol wrl output

HI David, Thanks for that tip. I didn't understand where the menu show as surface is? But, I did Hide everything, then Show Suface and Shapeways liked it! So I now have a working solution! Thanks EVERYONE! This is a great support mailing list! Ciao, Bob On Sun, May 4, 2014 at 2:08 PM,

[PyMOL] using a pseudoatom for distance measurement

Hi there, I want to measure the distance and angle between an aromatic ring (phenylalanin and a residue backbone) like this: http://www.pymolwiki.org/index.php/File:Pseu1.png I learned from here that I need to make a pseudoatom but I cannot make it work. I tried pseudoatom test, resi=100,

[PyMOL] Renaming sele to residue name

Hi pymol gurus out there, I'm trying to write a python script for a project and I need to know how to auto-name a selection. Is there a way in which I can make the default 'sele' selection name become protein name-chain-residue name-residue number when I click on a residue? You know when you