Hi Aliya,
yes, likely there is a clash. But that's hard to tell without seeing your data.
Cheers,
Thomas
On 01 Jul 2014, at 11:34, Aliya Holland
wrote:
> Hello,
>
> I just created an animation of a conformational change of a specific domain
> on a molecule. During the animation the domain
Monica,
Try:
align PDB1//A/80-120+160-220/, PDB2//A/80-120+160-220/
or if you want to align using the alpha carbons,
align PDB1//A/80-120+160-220/CA, PDB2//A/80-120+160-220/CA
Cheers,
-Rajintha
On Wed, Jul 2, 2014 at 7:22 AM, Monica Mittal
wrote:
> Dear all
> I need to align lets say resi 80-
Hi Monica,
I haven't tested, but maybe you could try:
align PDB1 and (resi 80-120 or resi 160-220), PDB2 and (resi 80-120 or resi
160-220)
I.e. expanding the selection to both streches. Running sequential
alignments will replace existing ones.
How this may help.
/Andreas
On Jul 2, 2014 1:24 PM,
Dear all
I need to align lets say resi 80-120 and 160-220 from one protein to resi
80-120 and 160-220 in second protein. How can i do this.
I tried following:
align PDB1 and resi 80-120, PDB2 and resi 80-120
this is for one set but how to do for two sets 80-120 as well as 160-220
simultaneously.
Th
