Re: [PyMOL] drawing arows, CONE cgo doesn't work. -- SOLVED

Hi all, I managed to solve the problem by looking at the cgo_arrow.py of Thomas Holder in the wiki: http://www.pymolwiki.org/index.php/Cgo_arrow my line was incorrect: cmd.load_cgo( [ CONE, x0, y0, z0, x1, y1, z1, radius, r1, g1, b1, r1, g1, b1 ], "cone_a" ) correct line: cmd.load_cgo( [ C

Re: [PyMOL] cartoon_transparency issue

On 25/08/14 18:42, Markus Heller wrote: > Hello, > > Attached is a crop of a figure create with the latest PyMOL under Windoze 7 > 64 bit. When setting cartoon_transparency, I get a gray band on the > cartoons. Where does this come from, and how do I get rid of it? > > Thanks and Cheers > Mar

Re: [PyMOL] pymol 3D movies

Hi Christian, Thanks so much for your email. I am looking forward to testing your approach and scripts soon. Again, thanks for the detailed explanations and the scripts. Best regards, Marcelo On Aug 25, 2014, at 6:02 PM, Christian Becke wrote: > Hi, > > Am 25.08.2014 21:44, schrieb Marcelo

[PyMOL] how to get the surface representation look better?

Dear all,Please see the figure (surface1.tif) I deposited in dropbox (https://www.dropbox.com/home, Account sunyep...@aliyun.com, Password: pymolusers). A is taken from a literature, and B is prepared by myself. In A, the stick representation of the side chains of residues P3, D156, R97, etc., i