Re: [PyMOL] apbs error (Error in background function)

2014-09-01 Thread Thomas, Jens
Hi, I think this is a known bug: http://sourceforge.net/p/pymolapbsplugin/bugs/1/ There is a fix mentioned but it involves patching the source code for the plugin, which worked for me but is somewhat involved. However it might help you find a solution or lead someone else to suggest something

[PyMOL] (no subject)

2014-09-01 Thread Pawe? Gniewek
Hi all, I wonder if it's possible to fill the space (like in the case of nucleotide's ring) between three arbitrary/selected atoms. I'm trying to render an object which is not a biomolecule so "cartoon_ring_mode" is no use for me. Cheers, pawel ---

[PyMOL] chain ID in oligomer obtained by symmetry operation

2014-09-01 Thread sunyeping
Dear all,I have the pdb file of a protein which contains one chain and the chian ID is "A". By symmetry operation of pymol I got an oligomer and save it as a new pdb file. However when I open the pdb file of the oligomer in pymol again, only one chain is display. I think it may caused by the cla