[PyMOL] PyMOL 1.7.4 released

Greetings, We are happy to announce the release of PyMOL v1.7.4.0! Official PyMOL sponsors can download ready-to-use installers from http://pymol.org/download . The open-source code has been pushed to sourceforge svn (revision 4104). This release is focused on adding and/or improving support fo

Re: [PyMOL] making liposomes

Hi Marcelo, You should check packmol . Packmol creates an initial point for molecular dynamics simulations by packing molecules in defined regions of space. The packing guarantees that short range repulsive interactions do not disrupt the simulations.

[PyMOL] making liposomes

Hi Everyone, Does anyone know of a way to generate/make liposome structures that can then be viewed in PyMol? Thanks, Marcelo -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly

Re: [PyMOL] sequence alignment function

PyMOL includes Biopython, so I would just use their sequence aligner. For instance: from Bio import pairwise2 alignments = pairwise2.align.globalxx("ACCGT", "ACG") See http://biopython.org/DIST/docs/api/Bio.pairwise2-pysrc.html -Spencer On Wed, Dec 3, 2014 at 9:33 AM, Jordan Willis wrote: >

[PyMOL] sequence alignment function

Hi, I know Pymol has a built-in sequence alignment function that ‘align’ uses before it does alignment. I was wondering how one could access this function generically for any given strings. I wanted to use this in a module and don’t want to rely on importing alignment modules from other package