Hi Christian,
the pymol.session variable is not really part of the API -- means, not intended
to be modified or accessed by the user. However, it's all Python and obviously
not hidden, so you can mess around with it, if you do it right. Short answer
is: Always access it as "pymol.session", don'
Works perfectly, thanks a lot!
On 30.01.2015 21:31, Thomas Holder wrote:
> Hi Christian,
>
> the pymol.session variable is not really part of the API -- means,
> not intended to be modified or accessed by the user. However, it's
> all Python and obviously not hidden, so you can mess around with it
Hi Matthew,
good catch, we'll fix that.
Cheers,
Thomas
On 28 Jan 2015, at 17:43, Matthew Baumgartner wrote:
> Hi,
> I've discovered a (relatively minor) bug in the Save Molecule... dialog
> box. This happened because I always have tons of windows up on multiple
> monitors and it got lost.
Dear Matic,
the only option to permanently store those paths is to edit the plugin file.
Look for "apbs_tools.py" in the PyMOL installation directory and there for
"Global config variables".
Cheers,
Thomas
On 30 Jan 2015, at 00:33, Matic Kisovec wrote:
> Dear Thomas,
>
> thank you for you
Hi Monica and Andreas,
you can also do this with the builder.
1) http://pymolwiki.org/index.php/Builder
2) Click "P=O3" (Phosphite)
3) Click the Serine OG atom
Cheers,
Thomas
On 30 Jan 2015, at 12:14, Andreas Warnecke <4ndreas.warne...@gmail.com> wrote:
> Hi Monica,
>
> You can check out th
Hi Monica,
You can check out the plugin PyTMs, which allows you to introduce PTMs into
protein models within PyMOL:
http://www.pymolwiki.org/index.php/Pytms
Let me know should you need any assistance with this plugin.
Cheers,
Andreas
On Fri, Jan 30, 2015 at 4:59 PM, Monica Mittal
wrote:
>
Hi,
Does any one know if there is a simple way to mutate a serine to a
phosphoserine using pymol? Or what would be the best way to achieve
this?
Thanks
Monica
--
Dive into the World of Parallel Programming. The Go Parall
Dear PyMol, I am doing now one of the Open3D QSAR tutorials and have the
problem that I need to remove the colored surfaces.
http://open3dqsar.sourceforge.net/?Tutorials
I can't find how to do it. Can you please recommend me how can I remove the
colored isosurface (isosurf command)?
Best regard
